PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g04710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 158aa    MW: 17572.5 Da    PI: 11.0654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g04710.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-0960100954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Vradi11g04710.1  60 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 100
                      699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.43451100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1452110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-1555110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-1457106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-661100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-674105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MTPPLQPNPS FSEKKNSVAA MREMIFRVAV MQPIHIDPES IKPPKRRNVK ISKDPQSVAA  60
RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KKQVQTLEQA GASRPLSVFG  120
FPGTVSNANN TVNYSSFMKS CQPCHMLGSA ASKHMLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520268.11e-113PREDICTED: transcription factor HEC2
SwissprotQ9FHA72e-48HEC1_ARATH; Transcription factor HEC1
SwissprotQ9SND41e-48HEC2_ARATH; Transcription factor HEC2
TrEMBLV7CHN46e-99V7CHN4_PHAVU; Uncharacterized protein
STRINGGLYMA01G39360.27e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-44bHLH family protein